IthaID: 3893
Names and Sequences
| Functionality: | Disease modifying mutation | Pathogenicity: | N/A |
|---|---|---|---|
| Common Name: | rs9533156 | HGVS Name: | NC_000013.11:g.42573535T>C |
We follow the
HGVS sequence variant nomenclature
and
IUPAC standards.
Context nucleotide sequence:
CACGCCCCTTTACCCTTTTCTCTGCAC [T>C] GTTTTCATCTTTATAAAGTCAGAGTT (Strand: +)
Comments: Associated with an increased risk of low bone mass density in pediatric beta-thalassemia patients.
External Links
Phenotype
| Allele Phenotype (Cis): | N/A |
|---|---|
| Allele Phenotype (Trans): | N/A |
| Associated Phenotypes: | Reduced bone mineral density [HP:0004349] |
Location
| Chromosome: | 13 |
|---|---|
| Locus: | NG_008990.1 |
| Locus Location: | 15800 |
| Size: | 1 bp |
| Located at: | RANKL |
| Specific Location: | Intron |
Other details
| Type of Mutation: | Point-Mutation(Substitution) |
|---|---|
| Effect on Gene/Protein Function: | N/A |
| Ethnic Origin: | Egyptian |
| Molecular mechanism: | N/A |
| Inheritance: | Quantitative trait |
| DNA Sequence Determined: | Yes |
In silico pathogenicity prediction
Sequence Viewer
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Publications / Origin
- Youssry I, Saad N, Madboly M, Samy RM, Hamed ST, Tawfik H, Elbatrawy SR, Kaddah N, Abd Elaziz D, Bone health in pediatric transfusion-dependent beta-thalassemia: Circulating osteoprotegerin and RANKL system., Pediatr Blood Cancer, 69(1), e29377, 2022 PubMed
Created on 2022-02-28 12:06:41,
Last reviewed on (Show full history)
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