IthaID: 3123
Names and Sequences
| Functionality: | Disease modifying mutation | Pathogenicity: | N/A |
|---|---|---|---|
| Common Name: | rs10904850 | HGVS Name: | NG_008967.1:g.179110C>T |
Context nucleotide sequence:
CCAGGAACTGGATTCAGCCCTTCAC [A/G] TACACTGTCCCATTTTATCCTCCCA (Strand: +)
Also known as:
Comments: SNP (allele A) associated with a lower haemoglobin concentration in children from Kenya.
We follow the HGVS sequence variant nomenclature and IUPAC standards.
External Links
Phenotype
| Allele Phenotype (Cis): | N/A |
|---|---|
| Allele Phenotype (Trans): | N/A |
| Associated Phenotypes: | Anaemia [HP:0001903] |
Location
| Chromosome: | 10 |
|---|---|
| Locus: | NG_008967.1 |
| Locus Location: | 179110 |
| Size: | 1 bp |
| Located at: | CUBN |
| Specific Location: | Intron 31 |
Other details
| Type of Mutation: | Point-Mutation(Substitution) |
|---|---|
| Effect on Gene/Protein Function: | N/A |
| Ethnic Origin: | Kenyan |
| Molecular mechanism: | N/A |
| Inheritance: | Quantitative trait |
| DNA Sequence Determined: | Yes |
In silico pathogenicity prediction
Note:
The impact thresholds provided in this section are based on the analyses performed in Tamana et.al. For any given tool, the impact thresholds defined for the set of variants with the same effect on function as the variant examined, are preferred over those defined for the full dataset.
Sequence Viewer
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Publications / Origin
- Gichohi-Wainaina WN, Tanaka T, Towers GW, Verhoef H, Veenemans J, Talsma EF, Harryvan J, Boekschoten MV, Feskens EJ, Melse-Boonstra A, Associations between Common Variants in Iron-Related Genes with Haematological Traits in Populations of African Ancestry., PLoS ONE , 11(6), e0157996, 2016 PubMed
Created on 2016-10-06 11:55:29,
Last reviewed on (Show full history)
| A/A | Date | Curator(s) | Comments |
|---|---|---|---|
| 1 | 2016-10-06 11:55:29 | The IthaGenes Curation Team | Created |
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IthaGenes was last updated on 2024-11-20 13:24:07