IthaID: 2689



Names and Sequences

Functionality: Disease modifying mutation
Common Name: rs10504269 HGVS Name: NG_011993.1:g.194098T>G

Context nucleotide sequence:
TTTAGGTCTTTTGAAAGCATTATAG [A/C] ATTTTAGACACCATGATAAATGACA (Strand: +)

Also known as:

Comments: SNP associated with HbF levels in the older subjects (≥ 24 years; n=538) of the Cooperative Study of Sickle Cell Disease (CSSCD). The association was replicated in an independent sample of sickle cell patients (n=211) acquired from the Multicenter Study of Hydroxyurea in Sickle Cell Anemia (MSH).

External Links

Location

Chromosome: 8
Locus: NG_011993.1
Locus Location: 194098
Size: 1 bp
Located at: TOX
Specific Location: Intron 3

Phenotype

Allele Phenotype (Cis):N/A
Allele Phenotype (Trans):N/A
Associated Phenotypes: Hb F levels [HP:0011904] [OMIM:141749]

Other details

Type of Mutation: Point-Mutation(Substitution)
Effect on Gene/Protein Function: N/A
Ethnic Origin: African American
Inheritance: Quantitative trait
DNA Sequence Determined: Yes

Sequence Viewer

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Publications / Origin

  1. Sebastiani P, Wang L, Nolan VG, Melista E, Ma Q, Baldwin CT, Steinberg MH, Fetal hemoglobin in sickle cell anemia: Bayesian modeling of genetic associations., Am. J. Hematol. , 83(3), 189-95, 2008 PubMed
Created on 2016-05-12 10:05:32, Last reviewed on 2016-05-12 10:14:32 (Show full history)

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