IthaID: 2630
Names and Sequences
| Functionality: | Disease modifying mutation | Pathogenicity: | N/A |
|---|---|---|---|
| Common Name: | rs6874468 | HGVS Name: | NG_042174.1:g.15921C>T |
Context nucleotide sequence:
AGACATGATATTTAGGTACTTACAG [A/G] GGCTGCCAAGGCCCTCCCGGCCAGG (Strand: +)
Protein sequence:
MRAWIFFLLCLAGRALAASQQEALPDETEVVEETVAEVTEVSVGANPVQVEVGEFDDGAEETEEEVVAENPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDLVI
Also known as:
Comments: SNP associated with elevated HbF in African Americans with sickle cell disease, recruited from the Cooperative Study of Sickle Cell Disease (CSSCD), the Comprehensive Sickle Cell Centers Collaborative Data (CDATA) study and the Thomas Jefferson University (n=244).
We follow the HGVS sequence variant nomenclature and IUPAC standards.
External Links
Phenotype
| Allele Phenotype (Cis): | N/A |
|---|---|
| Allele Phenotype (Trans): | N/A |
| Associated Phenotypes: | Hb F levels [HP:0011904] [OMIM:141749] |
Location
| Chromosome: | 5 |
|---|---|
| Locus: | NG_042174.1 |
| Locus Location: | 15921 |
| Size: | 1 bp |
| Located at: | SPARC |
| Specific Location: | Exon 2 |
Other details
| Type of Mutation: | Point-Mutation(Substitution) |
|---|---|
| Effect on Gene/Protein Function: | Missense codons (Protein Structure) |
| Ethnic Origin: | African American |
| Molecular mechanism: | N/A |
| Inheritance: | Quantitative trait |
| DNA Sequence Determined: | Yes |
In silico pathogenicity prediction
Sequence Viewer
Publications / Origin
- Liu L, Pertsemlidis A, Ding LH, Story MD, Steinberg MH, Sebastiani P, Hoppe C, Ballas SK, Pace BS, A case-control genome-wide association study identifies genetic modifiers of fetal hemoglobin in sickle cell disease., Exp. Biol. Med. (Maywood) , 2016 PubMed
| A/A | Date | Curator(s) | Comments |
|---|---|---|---|
| 1 | 2016-05-10 14:30:33 | The IthaGenes Curation Team | Created |
| 2 | 2016-05-16 12:53:06 | The IthaGenes Curation Team | Reviewed. |
| 3 | 2016-05-16 12:56:51 | The IthaGenes Curation Team | Reviewed. |
| 4 | 2016-05-16 12:58:03 | The IthaGenes Curation Team | Reviewed. |
| 5 | 2016-05-16 12:58:43 | The IthaGenes Curation Team | Reviewed. |
| 6 | 2016-05-25 10:14:30 | The IthaGenes Curation Team | Reviewed. |
| 7 | 2016-05-25 10:15:44 | The IthaGenes Curation Team | Reviewed. |