IthaID: 3671
Names and Sequences
Functionality: | Globin gene causative mutation | Pathogenicity: | Pathogenic / Likely Pathogenic |
---|---|---|---|
Common Name: | -76 C>T | HGVS Name: | HBB:c.-126C>T |
Hb Name: | N/A | Protein Info: | N/A |
Context nucleotide sequence:
TCACCCTGTGGAGCCACACCCTAGGGTTGG [C/T] CAATCTACTCCCAGGAGCAGGGAGGGCAGG (Strand: -)
Also known as:
Comments: Found in two Malay individuals with slightly increased Hb A2 levels (3.5%). The substitution C>T hits the first nucleotide in the CCAAT box of the β-globin gene.
We follow the HGVS sequence variant nomenclature and IUPAC standards.
External Links
No available links
Phenotype
Hemoglobinopathy Group: | Thalassaemia |
---|---|
Hemoglobinopathy Subgroup: | β-thalassaemia |
Allele Phenotype: | N/A |
Associated Phenotypes: | N/A |
Location
Chromosome: | 11 |
---|---|
Locus: | NG_000007.3 |
Locus Location: | 70469 |
Size: | 1 bp |
Located at: | β |
Specific Location: | Promoter |
Other details
Type of Mutation: | Point-Mutation(Substitution) |
---|---|
Effect on Gene/Protein Function: | N/A |
Ethnic Origin: | Malay |
Molecular mechanism: | N/A |
Inheritance: | Recessive |
DNA Sequence Determined: | Yes |
In silico pathogenicity prediction
Note:
The impact thresholds provided in this section are based on the analyses performed in Tamana et.al. For any given tool, the impact thresholds defined for the set of variants with the same effect on function as the variant examined, are preferred over those defined for the full dataset.
Publications / Origin
To the best of our knowledge, this is unpublished data. Please use with caution!
Microattributions
A/A | Contributor(s) | Date | Comments |
---|---|---|---|
1 | Mohd Yasin, Norafiza | 2020-10-20 | First report. |
Created on 2020-10-22 16:34:00,
Last reviewed on 2020-10-23 10:33:47 (Show full history)
A/A | Date | Curator(s) | Comments |
---|---|---|---|
1 | 2020-10-22 16:34:00 | The IthaGenes Curation Team | Created |
2 | 2020-10-22 16:41:18 | The IthaGenes Curation Team | Reviewed. Contributor added. |
3 | 2020-10-22 16:45:46 | The IthaGenes Curation Team | Reviewed. Specific location added. |
4 | 2020-10-23 10:33:47 | The IthaGenes Curation Team | Reviewed. Comment added. |
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IthaGenes was last updated on 2024-11-20 13:24:07