IthaID: 3602
Names and Sequences
Functionality: | Globin gene causative mutation | Pathogenicity: | N/A |
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Common Name: | -44 G>A | HGVS Name: | HBD:c.-94G>A |
Hb Name: | N/A | Protein Info: | N/A |
Context nucleotide sequence:
CCAACCTGCTCACTGGAGCAGGGA [G>A] GACAGGACCAGCATAAAAGGCAG (Strand: -)
Also known as:
Comments: Initially reported in an α+ thalassaemia carrier (-α4.2/αα) with a low level of HbA2 (1.12%) during an epidemiological survey in a student cohort, Guangxi Zhuang Autonomous Region. Reported as a compound heterozygote with δ -77 T>C with a slightly decreased hematological parameters (Hb 115 g/L, MCV 79.2 fL, MCH 25.3 pg, RDW 15.3%, HbA2 0.8%, and SF 15.40 ng/mL), which might be due to the lower level of SF.
We follow the HGVS sequence variant nomenclature and IUPAC standards.
External Links
Phenotype
Hemoglobinopathy Group: | Thalassaemia |
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Hemoglobinopathy Subgroup: | δ-thalassaemia |
Allele Phenotype: | δ+ |
Associated Phenotypes: | N/A |
Location
Chromosome: | 11 |
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Locus: | NG_000007.3 |
Locus Location: | 63089 |
Size: | 1 bp |
Located at: | δ |
Specific Location: | Promoter |
Other details
Type of Mutation: | Point-Mutation(Substitution) |
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Effect on Gene/Protein Function: | Promoter (Transcription) |
Ethnic Origin: | Chinese |
Molecular mechanism: | N/A |
Inheritance: | Recessive |
DNA Sequence Determined: | Yes |
In silico pathogenicity prediction
Note:
The impact thresholds provided in this section are based on the analyses performed in Tamana et.al. For any given tool, the impact thresholds defined for the set of variants with the same effect on function as the variant examined, are preferred over those defined for the full dataset.
Publications / Origin
- Xiong F, Sun M, Zhang X, Cai R, Zhou Y, Lou J, Zeng L, Sun Q, Xiao Q, Shang X, Wei X, Zhang T, Chen P, Xu X, Molecular epidemiological survey of haemoglobinopathies in the Guangxi Zhuang Autonomous Region of southern China., Clin. Genet., 78(2), 139-48, 2010
- Chen M, Huang H, Chen L, Lin N, Zhang M, Lin Y, Xu L, First report of the spectrum of δ-globin gene mutations among women of reproductive age in Fujian area-Discrimination of δ-thalassemia, α-thalassemia, and Iron Deficiency Anemia., J Clin Lab Anal, 34(11), e23479, 2020
Created on 2020-07-01 13:49:27,
Last reviewed on 2021-08-17 14:11:27 (Show full history)
A/A | Date | Curator(s) | Comments |
---|---|---|---|
1 | 2020-07-01 13:49:27 | The IthaGenes Curation Team | Created |
2 | 2020-07-01 13:50:29 | The IthaGenes Curation Team | Reviewed. 'Other details' section filled. |
3 | 2020-07-01 13:50:59 | The IthaGenes Curation Team | Reviewed. |
4 | 2020-07-01 13:54:32 | The IthaGenes Curation Team | Reviewed. |
5 | 2021-08-17 14:11:27 | The IthaGenes Curation Team | Reviewed. Reference and Allele phenotype added. Comment updated. |
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IthaGenes was last updated on 2024-12-03 11:48:06