IthaID: 3523
Names and Sequences
| Functionality: | Disease modifying mutation | Pathogenicity: | N/A |
|---|---|---|---|
| Common Name: | rs7138216 | HGVS Name: | NC_000012.12:g.4225142G>C |
Context nucleotide sequence:
AGAAAGGCAGGAGGACAAAGACCTGCA [G>C] AAAGTTTCCCATCTGGGAGCCTATGAGA (Strand: +)
Also known as:
Comments: SNP associated with a lower red blood cell count in the Kore Association Resource (KARE) project of the Korean Genome Epidemiology Study (KoGES; n=8842). The association was replicated in healthy samples from the Cardio Vascular Disease Association Study (CAVAS) of KoGES (n=3667). SNP is located approximately 50 kb upstream the ncRNA LOC105369612 within the intergenic region between RPL18P9 and CCND2-AS1.
We follow the HGVS sequence variant nomenclature and IUPAC standards.
External Links
Phenotype
| Allele Phenotype (Cis): | N/A |
|---|---|
| Allele Phenotype (Trans): | N/A |
| Associated Phenotypes: | Abnormal red blood cell count [HP:0020058] |
Location
| Chromosome: | 12 |
|---|---|
| Locus: | |
| Locus Location: | N/A |
| Size: | 1 bp |
| Located at: | RPL18P9-CCND2-AS1 |
| Specific Location: | N/A |
Other details
| Type of Mutation: | Point-Mutation(Substitution) |
|---|---|
| Effect on Gene/Protein Function: | N/A |
| Ethnic Origin: | Korean |
| Molecular mechanism: | N/A |
| Inheritance: | Quantitative trait |
| DNA Sequence Determined: | Yes |
In silico pathogenicity prediction
Publications / Origin
- Kim YK, Oh JH, Kim YJ, Hwang MY, Moon S, Low SK, Takahashi A, Matsuda K, Kubo M, Lee J, Kim BJ, Influence of Genetic Variants in EGF and Other Genes on Hematological Traits in Korean Populations by a Genome-Wide Approach., Biomed Res Int , 2015(0), 914965, 2015
Created on 2019-12-09 15:23:19,
Last reviewed on 2019-12-09 15:36:54 (Show full history)
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