IthaID: 3199
Names and Sequences
| Functionality: | Disease modifying mutation | Pathogenicity: | N/A |
|---|---|---|---|
| Common Name: | rs12654778 | HGVS Name: | NG_016421.1:g.4586G>A |
Context nucleotide sequence:
TATGGCTGTGGTTCGGTATAAGTCT [A/G] AGCATGTCTGCCAGGGTGTATTTGT (Strand: +)
Also known as:
Comments: SNP associated with chronic pain in sickle cell disease. SNP was found to be in a linkage disequilibrium block in the studied cohort.
We follow the HGVS sequence variant nomenclature and IUPAC standards.
External Links
Phenotype
| Allele Phenotype (Cis): | N/A |
|---|---|
| Allele Phenotype (Trans): | N/A |
| Associated Phenotypes: | Pain [HP:0012531] |
Location
| Chromosome: | 5 |
|---|---|
| Locus: | NG_016421.1 |
| Locus Location: | 4586 |
| Size: | 1 bp |
| Located at: | ADRB2 |
| Specific Location: | 5'UTR |
Other details
| Type of Mutation: | Point-Mutation(Substitution) |
|---|---|
| Effect on Gene/Protein Function: | N/A |
| Ethnic Origin: | N/A |
| Molecular mechanism: | N/A |
| Inheritance: | Quantitative trait |
| DNA Sequence Determined: | Yes |
In silico pathogenicity prediction
Publications / Origin
- Jhun E, He Y, Yao Y, Wilkie D, Molokie R, Wang J, (283) Beta2-adrenergic receptor gene polymorphisms and haplotypes associate with chronic pain in sickle cell disease., J Pain , 17(4), S46-S47, 2016
Created on 2017-02-28 12:58:19,
Last reviewed on (Show full history)
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