IthaID: 3195


Names and Sequences

Functionality: Disease modifying mutation Pathogenicity: N/A
Common Name: rs5030868 HGVS Name: NG_009015.2:g.18154C>T

Context nucleotide sequence:
TCTGACCGGCTGTCCAACCACATCT [C/T] CTCCCTGTTCCGTGAGGACCAGATC (Strand: -)

Also known as:

Comments: SNP associated with HbA1 levels in individuals from the SardiNIA study.

We follow the HGVS sequence variant nomenclature and IUPAC standards.

External Links

Phenotype

Allele Phenotype (Cis):N/A
Allele Phenotype (Trans):N/A
Associated Phenotypes: Anaemia [HP:0001903]

Location

Chromosome: X
Locus: NG_009015.2
Locus Location: 18154
Size: 1 bp
Located at: G6PD
Specific Location: Exon 6

Other details

Type of Mutation: Point-Mutation(Substitution)
Effect on Gene/Protein Function: Missense codons (Protein Structure)
Ethnic Origin: Sardinian
Molecular mechanism: N/A
Inheritance: Quantitative trait
DNA Sequence Determined: Yes

In silico pathogenicity prediction

Publications / Origin

  1. Danjou F, Zoledziewska M, Sidore C, Steri M, Busonero F, Maschio A, Mulas A, Perseu L, Barella S, Porcu E, Pistis G, Pitzalis M, Pala M, Menzel S, Metrustry S, Spector TD, Leoni L, Angius A, Uda M, Moi P, Thein SL, Galanello R, Abecasis GR, Schlessinger D, Sanna S, Cucca F, Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels., Nat. Genet. , 47(11), 1264-71, 2015
Created on 2017-02-21 12:05:39, Last reviewed on (Show full history)

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