IthaID: 301
Names and Sequences
Functionality: | Globin gene causative mutation | Pathogenicity: | N/A |
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Common Name: | -α4.2 | HGVS Name: | NC_000016.10:g.169818_174075del |
Hb Name: | N/A | Protein Info: | N/A |
Also known as:
Comments: Leftward crossover between misaligned homologous X boxes, which are 4.2 kb apart on the two chromosomes, produces one chromosome with the 4.2 kb deletion and only one functional α-globin gene (HBA1), that is a deletional form of α+ thalassaemia, and another chromosome with the three α-globin genes [IthaID: 2569]. View [PMID: 14500599] for a schematic representation of the crossover between mispaired X boxes and [PMID: 28865746] for HGVS name.
We follow the HGVS sequence variant nomenclature and IUPAC standards.
External Links
Phenotype
Hemoglobinopathy Group: | Thalassaemia |
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Hemoglobinopathy Subgroup: | α-thalassaemia |
Allele Phenotype: | α⁺ |
Associated Phenotypes: | Haemolytic anaemia [HP:0001878] |
Location
Chromosome: | 16 |
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Locus: | NG_000006.1 |
Locus Location: | 30681 |
Size: | 4.257 kb |
Fusion involves: | α2 |
Other details
Type of Mutation: | Fusion |
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Ethnic Origin: | Worldwide |
Molecular mechanism: | N/A |
Inheritance: | Recessive |
DNA Sequence Determined: | Yes |
In silico pathogenicity prediction
Note:
The impact thresholds provided in this section are based on the analyses performed in Tamana et.al. For any given tool, the impact thresholds defined for the set of variants with the same effect on function as the variant examined, are preferred over those defined for the full dataset.
Frequencies
Publications / Origin
- Embury SH, Miller JA, Dozy AM, Kan YW, Chan V, Todd D, Two different molecular organizations account for the single alpha-globin gene of the alpha-thalassemia-2 genotype., The Journal of clinical investigation, 66(6), 1319-25, 1980
- Bowden DK, Hill AV, Higgs DR, Oppenheimer SJ, Weatherall DJ, Clegg JB, Different hematologic phenotypes are associated with the leftward (-alpha 4.2) and rightward (-alpha 3.7) alpha+-thalassemia deletions., J. Clin. Invest. , 79(1), 39-43, 1987
- Fodde R, Losekoot M, van den Broek MH, Oldenburg M, Rashida N, Schreuder A, Wijnen JT, Giordano PC, Nayudu NV, Khan PM, Prevalence and molecular heterogeneity of alfa+ thalassemia in two tribal populations from Andhra Pradesh, India., Hum. Genet. , 80(2), 157-60, 1988
- Gupta RB, Tiwary RS, Pande PL, Kutlar F, Oner C, Oner R, Huisman TH, Hemoglobinopathies among the Gond tribal groups of central India; interaction of alpha- and beta-thalassemia with beta chain variants., Hemoglobin , 15(5), 441-58, 1991
- Baysal E, Huisman TH, Detection of common deletional alpha-thalassemia-2 determinants by PCR., Am. J. Hematol. , 46(3), 208-13, 1994
- Chang JG, Liu TC, Chiou SS, Chen JT, Chen TP, Lin CP, Rapid detection of -alpha 4.2 deletion of alpha-thalassemia-2 by polymerase chain reaction., Ann. Hematol. , 69(4), 205-9, 1994
- Wang W, Ma ES, Chan AY, Prior J, Erber WN, Chan LC, Chui DH, Chong SS, Single-tube multiplex-PCR screen for anti-3.7 and anti-4.2 alpha-globin gene triplications., Clin. Chem., 49(10), 1679-82, 2003
- Lin W, Zhang Q, Shen Z, Qu X, Wang Q, Wei L, Qiu Y, Yang J, Xu X, Lao J, Molecular and phenotype characterization of an elongated β-globin variant produced by HBB:C.313delA., Int J Lab Hematol, 43(6), 1620-1627, 2021
- Huang Y, Ju A, Zheng L, Xu B, Liang L, Li Y, Genetic screening of α-thalassemia fusion gene using routine flow-through hybridization., Front Genet, 15(0), 1460974, 2024
Created on 2010-06-16 16:13:15,
Last reviewed on 2025-01-10 11:42:39 (Show full history)
A/A | Date | Curator(s) | Comments |
---|---|---|---|
1 | 2010-06-16 16:13:15 | The IthaGenes Curation Team | Created |
2 | 2013-10-15 17:28:32 | The IthaGenes Curation Team | Reviewed. |
3 | 2014-06-04 10:50:10 | The IthaGenes Curation Team | Reviewed. Additional references and HbVar link added. |
4 | 2019-06-10 14:20:18 | The IthaGenes Curation Team | Reviewed. Reference and Comment added. |
5 | 2019-06-10 14:25:12 | The IthaGenes Curation Team | Reviewed. |
6 | 2019-06-10 14:38:24 | The IthaGenes Curation Team | Reviewed. Comment edited. |
7 | 2019-06-10 15:31:37 | The IthaGenes Curation Team | Reviewed. Comment edited. |
8 | 2021-10-26 12:32:29 | The IthaGenes Curation Team | Reviewed. HGVS name and reference added. |
9 | 2021-12-22 12:42:11 | The IthaGenes Curation Team | Reviewed. Sized corrected. Reference added. |
10 | 2025-01-10 11:41:18 | The IthaGenes Curation Team | Reviewed. Reference added. |
11 | 2025-01-10 11:42:39 | The IthaGenes Curation Team | Reviewed. Reference added. |
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