IthaID: 152
Names and Sequences
| Functionality: | Globin gene causative mutation | Pathogenicity: | Pathogenic / Likely Pathogenic |
|---|---|---|---|
| Common Name: | CD 45 (-T) | HGVS Name: | HBB:c.138delT |
| Hb Name: | N/A | Protein Info: | N/A |
| Also known as: |
We follow the
HGVS sequence variant nomenclature
and
IUPAC standards.
Context nucleotide sequence:
TTGGACCCAGAGGTTCTTTGAGTCCTT [-/T] GGGGATCTGTCCACTCCTGATGC (Strand: -)
Comments: Found in two members of a Pakistani family presenting with heterozygous beta-thal trait. Found in two unrelated Pakistani individuals having children with transfusion-dependent thalassaemia. The loss of nt T in codon 45 results in a frameshift with a stop codon at codon 60 (TGA) terminating translation.
Phenotype
| Hemoglobinopathy Group: | Thalassaemia |
|---|---|
| Hemoglobinopathy Subgroup: | β-thalassaemia |
| Allele Phenotype: | β0 |
| Associated Phenotypes: |
Haemolytic anaemia [HP:0001878] Ineffective erythropoiesis [HP:0010972] |
Location
| Chromosome: | 11 |
|---|---|
| Locus: | NG_000007.3 |
| Locus Location: | 70862 |
| Size: | 1 bp |
| Located at: | β |
| Specific Location: | Exon 2 |
Other details
| Type of Mutation: | Point-Mutation(Deletion) |
|---|---|
| Effect on Gene/Protein Function: | Frameshift (Translation) |
| Ethnic Origin: | Pakistani |
| Molecular mechanism: | N/A |
| Inheritance: | Recessive |
| DNA Sequence Determined: | No |
In silico pathogenicity prediction
Frequencies
Publications / Origin
- el-Kalla S, Mathews AR, A novel beta-thalassemia mutation [codon 45(-T)] in a Pakistani family., Hemoglobin , 21(6), 499-503, 1997
- Hussain A, Ahmed S, Ali N, S Mailk H, Anees M, Chuahdry AH, Ahmed P, Rare β-Globin Gene Mutations in Pakistan., Hemoglobin , 41(2), 100-103, 2017
Created on 2010-06-16 16:13:15,
Last reviewed on 2019-11-11 16:03:39 (Show full history)
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